
Alapakkam Sampath Laboratory
Phototransduction and Synaptic Transmission
Understanding visual processing in the retina

Alapakkam Sampath, Ph.D.
Professor
Grace and Walter Lantz Endowed Chair in Ophthalmology
Departments of Ophthalmology and Neurobiology
Associate Director of Research
Jules Stein Eye Institute
The goal of the Sampath laboratory is the elucidation of fundamental mechanisms of visual processing. We have focused on generating a deeper understanding of development and signaling between photoreceptor cells—the rods and cones—and their synaptic partners, the bipolar cells, to determine how information is formed and processed within retinal circuits.
Our research focuses on the following questions:
- How can rod photoresponses in the mammalian retina provide such an enormous range of rod vision - from single-photon responses in few rods to light bright enough to activate thousands or tens of thousands of rhodopsin pigment molecules per second?
- How do the many mechanisms of pigment regeneration influence photoreceptor and circuit-level sensitivity in steady light?
- What are the molecules that determine the specificity of synaptic connections between photoreceptors and bipolar cells during development? How are rod and cone photoresponses integrated in the outer retina to provide a seamless shift from rod vision to cone vision as the light intensity increases?
- What is the role of retinal remodeling in controlling visual sensitivity during photoreceptor degeneration? How is this remodeling affected when vision is restored with gene therapy?
- How is retinal structure and function altered or conserved across the animal kingdom? What are the implications of these similarities and differences for the evolution of the vertebrate retina?
These questions remain of great interest because of the large proportion of visual deficits arising from abnormal signaling, either within the phototransduction cascade or in synaptic transmission from photoreceptor terminals to bipolar cells. To answer these questions, we employ classical (but still state-of-the-art) physiological techniques to measure light-evoked responses of photoreceptors, bipolar cells, and ganglion cells, which let us determine how the functional properties of responses are constructed by the retinal circuitry.
Recent Publications
E122Q rhodopsin: pigment microspectrophotometry, photoreceptor light responses, and bleaching adaptation
Christopher J. Meredith, Annabelle N. Tran, Alapakkam P. Sampath, Gordon L. Fain, Rikard Frederiksen
Journal of Comparative Physiology A (2026)
View PublicationThe Role of the Ca2+-activated Cl− Conductance in the Membrane Potential and Light Response of Mouse Rods
Rikard Frederiksen, Paul J. Bonezzi, Gordon L. Fain, Alapakkam P. Sampath
The Journal of Neuroscience (2025)
View PublicationEvolution of rod bipolar cells and rod vision
Rikard Frederiksen, Yi‐Rong Peng, Alapakkam P. Sampath, Gordon L. Fain
The Journal of Physiology (2025)
View PublicationPhotoreceptor degeneration induces homeostatic rewiring of rod bipolar cells
Paul J. Bonezzi, Rikard Frederiksen, Annabelle N. Tran, Kyle Kim, Gordon L. Fain, Alapakkam P. Sampath
Current Biology (2025)
View PublicationConservation of cis-regulatory codes over half a billion years of evolution.
Ogawa Y, Liu Y, Myers CA, Morshedian A, Fain GL, Sampath AP, Corbo JC
Science advances (2025)
View PublicationTemporal Transformation of the Rod Single-Photon Response in the Retinal Circuitry.
Okawa H, Sampath AP
Investigative ophthalmology & visual science (2025)
View PublicationGenetic manipulation of rod-cone differences in mouse retina
Ala Morshedian, Zhichun Jiang, Roxana A. Radu, Gordon L. Fain, Alapakkam P. Sampath
PLOS ONE (2024)
View PublicationMolecular characterization of the sea lamprey retina illuminates the evolutionary origin of retinal cell types
Junqiang Wang, Lin Zhang, Martina Cavallini, Ali Pahlevan, Junwei Sun, Ala Morshedian, Gordon L. Fain, Alapakkam P. Sampath, Yi-Rong Peng
Nature Communications (2024)
View PublicationA new mouse model for PRPH2 pattern dystrophy exhibits functional compensation prior and subsequent to retinal degeneration.
Cavanaugh BL, Milstein ML, Boucher RC, Tan SX, Hanna MW, Seidel A, Frederiksen R, Saunders TL, Sampath AP, Mitton KP, Zhang DQ, Goldberg AFX
Human molecular genetics (2024)
View PublicationRDH12 allows cone photoreceptors to regenerate opsin visual pigments from a chromophore precursor to escape competition with rods.
Kaylor JJ, Frederiksen R, Bedrosian CK, Huang M, Stennis-Weatherspoon D, Huynh T, Ngan T, Mulamreddy V, Sampath AP, Fain GL, Travis GH
Current biology : CB (2024)
View Publication