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Yi-Rong Peng Laboratory

Retinal Transcriptomics and Vision Research

Decoding the molecular mechanisms underlying retinal development, cell-type specificity, and disease

Dr. Yi-Rong Peng

Yi-Rong Peng, Ph.D.

Assistant Professor

Departments of Ophthalmology and Neurobiology

Jules Stein Eye Institute

Cells are the building blocks of complex biological systems, exhibiting remarkable diversity in the visual system. Understanding how cell types form, connect, and degenerate is fundamental to uncover the mechanisms behind blinding diseases. The Peng lab leverages multi-omics approaches–genomics, transcriptomics, and proteomics–to decode genetic programs that define cell-type features, unravel the molecular basis of specialized human vision, and identify key signatures driving degeneration in ocular diseases.

Research Focus Areas:

  • Genetic Regulations of Cell Type Generation and Differentiation
  • Molecular Mechanisms of Circuit Formation and Specialization
  • Cellular and Synaptic Adaptations During Retinal Degeneration
  • Cellular and Circuit Principles of the Aging process in the Visual System

The ultimate goal of our research is to provide a fundamental understanding of circuit formation and degeneration in the visual system and to develop therapeutic strategies to prevent or treat vision loss.

Selected Publications

Molecular Characterization of the Sea Lamprey Retina Illuminates the Evolutionary Origin of Retinal Cell Types

Wang J., Zhang L., Cavallini M., Pahlevan A., Sun J., Morshedian A., Fan G.L., Sampath A.P., Peng Y.R.

Nature Communications (2024)

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Evolutionary and Developmental Specialization of Foveal Cell Types in the Marmoset

Zhang L., Cavallini M., Wang J., Xin R., Zhang Q., Feng G., Sanes J.R., Peng Y.R.

Proceedings of the National Academy of Sciences (2024)

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Binary fate choice between closely related interneuronal types is determined by a Fezf1-dependent postmitotic transcriptional switch

Peng Y.R.*, James R.E.*, Yan W., Kay J.N., Kolodkin A.L., Sanes J.R.

Neuron (2020)

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Molecular classification and comparative taxonomics of foveal and peripheral cells in primate retina

Peng Y.R.*, Shekhar K.*, Yan W., Herrmann D., Sappington A., Bryman G.S., Van Zyl T., Do. M.T.H., Regev A., Sanes, J.R.

Cell (2019)

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